Both the Import from FME and Export to FME dialogs provide the ability to filter and map feature classes.

To filter which feature classes to process, use the check boxes to select or unselect. To reset your selection, choose Reset from the right click menu.

Selecting a feature class will enable you to change the Mapped Name.

The Where Clause option launches the Advanced Search dialog.

Filter and mapping settings can be saved for reuse. Choose Save Mappings to save the current filter and mapped names. The settings are saved in a *.selection.xml file. Choose Load Mappings to load previously saved settings.